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Guppy genetics basics: why colour “changes” in your fry (and how to keep a line consistent)

Fry colour variation is normal. Line consistency comes from selection over generations, not one perfect pairing.

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One of the quickest surprises new guppy breeders face is this: you buy a beautiful pair, they breed, and the fry don’t look identical. Some look washed out, some have odd patterns, some develop different tail shapes. This doesn’t mean you were sold “bad fish”. It means you’re seeing how genetics behaves in real life. Most guppy traits are influenced by multiple genes, and many lines carry hidden traits that appear in the next generation.

Why fry colour looks “random”

  • Hidden traits: parents can carry traits that don’t show in their own colour.
  • Polygenic traits: many patterns and colours are influenced by multiple genes.
  • Age and lighting: fry often colour up later; early judgement can be misleading.
  • Environment: nutrition and water stability affect expression and intensity.

How to keep a line consistent (the simple approach)

Consistency comes from selection, not hope. Keep a small group, identify the few fish that best match the target look, and breed those forward. Over multiple generations, the line tightens.

Practical selection rules

  • judge at a consistent age (often 8–12 weeks for clearer reads)
  • focus on body shape and strength first, colour second
  • avoid breeding obvious deformities or weak finnage
  • keep notes on pairings so you understand what each cross produces

What to do with “off” fry

Not every fry belongs in the breeding program. Off-pattern fish can be kept as pets, rehomed responsibly, or separated. The key is that line-breeding is a long game: consistency comes from repeating good selections, not from chasing perfection in one spawn.

Guppy genetics can feel messy at first, but it becomes predictable when you observe outcomes, select intentionally, and keep conditions stable. That’s how stable lines are made.